STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PDE1BPhosphodiesterase. (456 aa)    
Predicted Functional Partners:
CALML3
Calmodulin, striated muscle.
    
 0.943
CALM1
Calmodulin 1.
    
 0.943
CALML4
Calmodulin-like protein 4.
    
 0.925
AK3
GTP:AMP phosphotransferase AK3, mitochondrial; Belongs to the adenylate kinase family.
     
 0.916
ENPP1
Ectonucleotide pyrophosphatase/phosphodiesterase family member 1.
     
 0.912
ENPP3
Ectonucleotide pyrophosphatase/phosphodiesterase family member 3.
     
 0.912
PDE1C_0
Calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1C; Belongs to the cyclic nucleotide phosphodiesterase family.
  
  
 
0.910
APRT
Adenine phosphoribosyltransferase.
     
 0.908
GMPR
GMP reductase; Catalyzes the irreversible NADPH-dependent deamination of GMP to IMP. It functions in the conversion of nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and in maintaining the intracellular balance of A and G nucleotides.
     
 0.907
ADK
Adenosine kinase.
     
 0.903
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.