Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PBDC1Protein PBDC1. (300 aa)    
Predicted Functional Partners:
TTLL12
Tubulin--tyrosine ligase-like protein 12.
    
   0.922
SNRPD1
Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.
   
  
 0.738
MYSM1
Histone H2A deubiquitinase MYSM1.
   
 
 0.727
EEF1A2
Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
    
   0.718
EEF1A1
Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
    
   0.718
MAPT
Microtubule associated protein tau.
    
   0.586
SACM1L
Phosphatidylinositide phosphatase SAC1.
      
 0.573
GSPT1
Eukaryotic peptide chain release factor GTP-binding subunit ERF3A.
    
   0.558
BCKDHB
2-oxoisovalerate dehydrogenase subunit beta, mitochondrial.
      
 0.542
OPRM1
Mu-type opioid receptor; Belongs to the G-protein coupled receptor 1 family.
      
 0.538
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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