STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSDE1Cold shock domain-containing protein E1. (796 aa)    
Predicted Functional Partners:
RAF1
RAF proto-oncogene serine/threonine-protein kinase.
    
 0.861
RALGDS
Ral guanine nucleotide dissociation stimulator.
   
 0.813
RGL1
Ral guanine nucleotide dissociation stimulator-like 1.
   
 0.813
BRAF
Serine/threonine-protein kinase B-raf.
   
 0.810
RASA1
Ras GTPase-activating protein 1.
   
 0.798
SOS1
Son of sevenless 1.
   
 0.789
PIK3CA
Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit.
   
 0.786
SOS2
Son of sevenless 2.
   
 0.725
GRB2
Growth factor receptor-bound protein 2.
   
 0.694
PIK3CD
Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit.
   
 0.688
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.