STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LRRTM1Leucine-rich repeat transmembrane neuronal protein 1/2. (547 aa)    
Predicted Functional Partners:
CLSTN3
Calsyntenin-3.
   
  
 0.880
NRXN1
Neurexin-1.
   
 0.764
KCNS3
Potassium voltage-gated channel subfamily S member 3; Belongs to the potassium channel family.
   
 
 0.678
TRAPPC10
Trafficking protein particle complex subunit 10.
      
 0.675
RAB12
Ras-related protein Rab-12.
    
  0.663
ENSLSDP00000004177
annotation not available
   
 0.659
NRXN3
Neurexin-3.
   
 0.659
ENSLSDP00000004589
annotation not available
   
 0.659
NRXN3-2
Neurexin 3.
   
 0.629
KCNG3
Potassium voltage-gated channel subfamily G member 3; Belongs to the potassium channel family.
    
 
 0.618
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.