STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SLC39A3Zinc transporter ZIP3. (340 aa)    
Predicted Functional Partners:
TOMM40L
Mitochondrial import receptor subunit TOM40B.
   
 
 0.696
SAMM50
Sorting and assembly machinery component 50.
    
 
 0.662
SLC39A12
Zinc transporter ZIP12.
   
 0.623
TOMM7
Mitochondrial import receptor subunit TOM7.
    
 
 0.613
SLC39A11
Zinc transporter ZIP11.
   
 0.562
SLC30A6
Zinc transporter 6.
   
 
 0.541
SLC30A1
Zinc transporter 1.
   
 
 0.536
SLC39A13
Zinc transporter ZIP13.
   
 0.524
MTX3
Metaxin.
   
 
 0.506
MTX1
Metaxin.
   
 
 0.506
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.