STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KCNAB1Voltage-gated potassium channel subunit beta-1. (400 aa)    
Predicted Functional Partners:
KCNF1
Potassium voltage-gated channel subfamily F member 1; Belongs to the potassium channel family.
   
 0.811
KCNH5
Potassium voltage-gated channel subfamily H member 5.
    
 0.774
KCNH1
Potassium voltage-gated channel subfamily H member 1.
    
 0.774
HAO1
Hydroxyacid oxidase 1.
    
 
 0.743
NUP133
Nuclear pore complex protein Nup133.
   
 0.729
NUP107
Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).
   
 0.717
KCND2
Potassium voltage-gated channel Shal-related subfamily D member 2.
    
 0.707
KCND3
Potassium voltage-gated channel subfamily D member 3; Belongs to the potassium channel family.
    
 0.707
KCNB1
Potassium voltage-gated channel subfamily B member 1; Belongs to the potassium channel family.
   
 0.703
SEC13
Protein SEC13; Belongs to the WD repeat SEC13 family.
    
 0.692
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.