STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SAP130Histone deacetylase complex subunit SAP130. (1059 aa)    
Predicted Functional Partners:
ARID4B
AT-rich interactive domain-containing protein 4B.
    
 0.794
SINHCAF
SIN3-HDAC complex-associated factor.
    
 
 0.770
SAP30
Histone deacetylase complex subunit SAP30.
    
 0.723
SAP30L
Histone deacetylase complex subunit SAP30L-B.
    
 0.723
SUDS3
Sin3 histone deacetylase corepressor complex component SDS3.
   
 0.722
SIN3B
Paired amphipathic helix protein Sin3b.
   
 0.653
SIN3A
Paired amphipathic helix protein Sin3a.
   
 0.653
ING2
Inhibitor of growth protein.
    
 
 0.617
SNUPN
Snurportin-1; Functions as an U snRNP-specific nuclear import adapter. Involved in the trimethylguanosine (m3G)-cap-dependent nuclear import of U snRNPs. Binds specifically to the terminal m3G-cap U snRNAs. Belongs to the snurportin family.
      
 0.576
D2HGDH
D-2-hydroxyglutarate dehydrogenase.
    
 
 0.571
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.