STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CALHM4Protein FAM26D. (326 aa)    
Predicted Functional Partners:
C1orf109
Uncharacterized protein C1orf109.
   
    0.568
NT5DC1
5'-nucleotidase domain-containing protein 1.
      
 0.517
RUBCNL
Uncharacterized protein KIAA0226-like.
   
    0.514
CWC25
Pre-mRNA-splicing factor CWC25.
   
    0.499
FBXO47
F-box only protein 47.
   
    0.459
LOC110467862
LIX1-like protein.
   
    0.408
LOC110467864
LIX1-like protein.
   
    0.408
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.