Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CCNL1Cyclin-L1; Belongs to the cyclin family. (515 aa)    
Predicted Functional Partners:
LOC110470319
Cyclin-dependent kinase 11B.
   
 
 0.928
ENSLSDP00000002397
annotation not available
   
   0.842
CCNL2
Cyclin-L1; Belongs to the cyclin family.
   
   0.842
ILF3
Interleukin enhancer-binding factor 3.
    
   0.836
SAP30BP
SAP30-binding protein.
    
   0.771
SAP30BP_1
SAP30-binding protein.
    
   0.771
CDK10
Cyclin-dependent kinase 10; Belongs to the protein kinase superfamily.
   
 
 0.750
GPATCH2
G patch domain-containing protein 2.
   
   0.715
ZNF276
Zinc finger protein 276.
   
  
 0.699
ELAVL1
ELAV-like protein; Belongs to the RRM elav family.
   
 
 0.675
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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