Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PTX3Pentraxin-related protein PTX3. (424 aa)    
Predicted Functional Partners:
CFH
Complement factor H.
    
 
 0.928
TNFAIP6
Tumor necrosis factor-inducible gene 6 protein.
   
 0.867
ENSLSDP00000020135
annotation not available
    
 
 0.829
AMBP
Protein AMBP.
      
 0.633
FIBCD1
Fibrinogen C domain-containing protein 1.
    
 
 0.584
IL1B
Interleukin-1; Belongs to the IL-1 family.
   
  
 0.557
C1S
Complement C1s subcomponent; Belongs to the peptidase S1 family.
     
 0.548
LOC110472214
Ficolin-1.
    
 
 0.523
LOC110468582
Complement C4.
    
 
 0.506
C3
Complement C3.
    
 
 0.506
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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