STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BCAS2Pre-mRNA-splicing factor SPF27. (226 aa)    
Predicted Functional Partners:
PRPF19
Pre-mRNA-processing factor 19.
   
 0.988
CDC5L
Cell division cycle 5-like protein.
   
 0.987
PLRG1
Pleiotropic regulator 1.
   
 0.987
CTNNBL1
Beta-catenin-like protein 1.
   
 0.976
CWC15
Spliceosome-associated protein CWC15.
   
 0.975
SYF2
Pre-mRNA-splicing factor SYF2.
    
 0.922
CRNKL1
Crooked neck-like protein 1.
    
 0.902
PRPF8
Pre-mRNA-processing-splicing factor 8.
    
 
 0.881
SF3B4
Splicing factor 3B subunit 4.
   
 
 0.880
RBM22
Pre-mRNA-splicing factor RBM22.
    
 0.879
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.