Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FMR1Fragile X mental retardation protein 1. (548 aa)    
Predicted Functional Partners:
TDRD3
Tudor domain-containing protein 3.
    
 
 0.936
NUFIP2
Nuclear fragile X mental retardation-interacting protein 2.
   
 
 0.924
G3BP1
Ras GTPase-activating protein-binding protein 1.
    
 
 0.913
SERBP1
Plasminogen activator inhibitor 1 RNA-binding protein.
   
 
 0.900
CYFIP1
Cytoplasmic FMR1-interacting protein; Belongs to the CYFIP family.
    
 
 0.888
FXR1
Fragile X mental retardation syndrome-related protein 1.
   
   0.878
CYFIP2
Cytoplasmic FMR1-interacting protein; Belongs to the CYFIP family.
    
 
 0.871
CAPRIN2
Caprin-2.
   
 
 0.851
G3BP2
Ras GTPase-activating protein-binding protein 2.
    
 
 0.835
STAU1
Double-stranded RNA-binding protein Staufen 1.
   
 
 0.831
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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