Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPGRIP1LProtein fantom. (236 aa)    
Predicted Functional Partners:
NPHP4
Nephrocystin-4.
    
 0.980
NPHP1
Nephrocystin-1.
    
 0.959
ENSLSDP00000009152
annotation not available
    
 0.928
RPGR
X-linked retinitis pigmentosa GTPase regulator.
    
 
 0.904
NEK4
Serine/threonine-protein kinase Nek4.
   
 
 0.696
CC2D2A
Coiled-coil and C2 domain-containing protein 2A.
   
  
 0.645
TMEM67
Meckelin.
   
  
 0.642
CEP290
Centrosomal protein.
   
  
 0.631
IFT88
Intraflagellar transport protein 88.
   
  
 0.617
AHI1
Jouberin.
     
 0.604
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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