Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
PTPRAReceptor-type tyrosine-protein phosphatase alpha. (784 aa)    
Predicted Functional Partners:
UBOX5
RING finger protein 37.
      
 0.949
GRB2
Growth factor receptor-bound protein 2.
    
 0.834
MAVS
Mitochondrial antiviral-signaling protein.
      
 0.817
PTPRE
Receptor-type tyrosine-protein phosphatase epsilon.
    
   0.753
MRPS26
28S ribosomal protein S26, mitochondrial.
      
 0.745
YES1
Tyrosine-protein kinase.
    
 0.592
SRC
Tyrosine-protein kinase.
    
 0.592
IL1RAP
Interleukin-1 receptor accessory protein.
    
 0.584
PTS
6-pyruvoyltetrahydropterin synthase.
    
 
 0.540
CRH
Corticoliberin.
      
 0.529
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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