STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSLSDP00000001988Splicing regulator RBM11-like. (166 aa)    
Predicted Functional Partners:
ZCCHC8
Zinc finger CCHC domain-containing protein 8.
    
   0.856
LOC110476133
Serine/Arginine-related protein 53.
   
 
 0.722
WDR13
WD repeat-containing protein 13.
    
 
 0.717
MCM3AP
Germinal-center associated nuclear protein.
   
  
 0.704
SRSF1
Serine/arginine-rich splicing factor 1.
    
 
 0.685
RBM17
Splicing factor 45.
      
 0.675
MTREX
Superkiller viralicidic activity 2-like 2.
   
   0.654
STEAP4
Metalloreductase STEAP4.
      
 0.648
SETD7
Histone-lysine N-methyltransferase SETD7; Histone methyltransferase that specifically monomethylates 'Lys-4' of histone H3. H3 'Lys-4' methylation represents a specific tag for epigenetic transcriptional activation. Plays a central role in the transcriptional activation of genes.
      
 0.639
SLC4A1AP
Kanadaptin.
   
   0.635
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.