SNX4 protein (Lonchura striata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

SNX4

Sorting nexin-4. (445 aa)

Predicted Functional Partners:

SNX30

0.951

SNX1

0.941

SNX2

0.928

SNX7

0.921

VPS29

0.865

VTI1B

0.771

VPS35

0.750

VPS26B

0.733

SNX6

0.727

SNX5

0.727

Your Current Organism:

Lonchura striata

NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SNX1	SNX2	ENSLSDP00000015630	ENSLSDP00000020371	Sorting nexin-1.	Sorting nexin-2.	0.999
SNX1	SNX4	ENSLSDP00000015630	ENSLSDP00000002005	Sorting nexin-1.	Sorting nexin-4.	0.941
SNX1	SNX5	ENSLSDP00000015630	ENSLSDP00000019701	Sorting nexin-1.	Sorting nexin; Involved in several stages of intracellular trafficking.	0.915
SNX1	SNX6	ENSLSDP00000015630	ENSLSDP00000003036	Sorting nexin-1.	Sorting nexin; Involved in several stages of intracellular trafficking.	0.915
SNX1	VPS26B	ENSLSDP00000015630	ENSLSDP00000011399	Sorting nexin-1.	Vacuolar protein sorting-associated protein 26B.	0.940
SNX1	VPS29	ENSLSDP00000015630	ENSLSDP00000006390	Sorting nexin-1.	Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway.	0.981
SNX1	VPS35	ENSLSDP00000015630	ENSLSDP00000025329	Sorting nexin-1.	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	0.983
SNX2	SNX1	ENSLSDP00000020371	ENSLSDP00000015630	Sorting nexin-2.	Sorting nexin-1.	0.999
SNX2	SNX4	ENSLSDP00000020371	ENSLSDP00000002005	Sorting nexin-2.	Sorting nexin-4.	0.928
SNX2	SNX5	ENSLSDP00000020371	ENSLSDP00000019701	Sorting nexin-2.	Sorting nexin; Involved in several stages of intracellular trafficking.	0.908
SNX2	SNX6	ENSLSDP00000020371	ENSLSDP00000003036	Sorting nexin-2.	Sorting nexin; Involved in several stages of intracellular trafficking.	0.908
SNX2	VPS26B	ENSLSDP00000020371	ENSLSDP00000011399	Sorting nexin-2.	Vacuolar protein sorting-associated protein 26B.	0.969
SNX2	VPS29	ENSLSDP00000020371	ENSLSDP00000006390	Sorting nexin-2.	Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway.	0.992
SNX2	VPS35	ENSLSDP00000020371	ENSLSDP00000025329	Sorting nexin-2.	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	0.994
SNX30	SNX4	ENSLSDP00000013874	ENSLSDP00000002005	Sorting nexin-30.	Sorting nexin-4.	0.951
SNX30	SNX5	ENSLSDP00000013874	ENSLSDP00000019701	Sorting nexin-30.	Sorting nexin; Involved in several stages of intracellular trafficking.	0.607
SNX30	SNX6	ENSLSDP00000013874	ENSLSDP00000003036	Sorting nexin-30.	Sorting nexin; Involved in several stages of intracellular trafficking.	0.607
SNX30	VPS26B	ENSLSDP00000013874	ENSLSDP00000011399	Sorting nexin-30.	Vacuolar protein sorting-associated protein 26B.	0.504
SNX30	VPS29	ENSLSDP00000013874	ENSLSDP00000006390	Sorting nexin-30.	Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway.	0.626
SNX30	VPS35	ENSLSDP00000013874	ENSLSDP00000025329	Sorting nexin-30.	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	0.753