LOC110473284 protein (Lonchura striata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC110473284

Vasotocin-neurophysin VT. (164 aa)

Predicted Functional Partners:

AVPR1B

0.980

LOC110478544

0.980

AVPR1A

0.980

OXTR

0.817

NPSR1

0.700

AQP1

0.699

LOC110472977

0.647

LOC110472947

0.647

CRYAB

0.629

TRH

0.621

Your Current Organism:

Lonchura striata

NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AQP1	LOC110473284	ENSLSDP00000014298	ENSLSDP00000002009	Aquaporin-1; Belongs to the MIP/aquaporin (TC 1.A.8) family.	Vasotocin-neurophysin VT.	0.699
AVPR1A	AVPR1B	ENSLSDP00000022800	ENSLSDP00000002484	Vasopressin V1a receptor.	Vasopressin V1b receptor.	0.907
AVPR1A	LOC110473284	ENSLSDP00000022800	ENSLSDP00000002009	Vasopressin V1a receptor.	Vasotocin-neurophysin VT.	0.980
AVPR1A	LOC110478544	ENSLSDP00000022800	ENSLSDP00000008775	Vasopressin V1a receptor.	[Arg8]-vasotocin receptor; Belongs to the G-protein coupled receptor 1 family. Vasopressin/oxytocin receptor subfamily.	0.902
AVPR1B	AVPR1A	ENSLSDP00000002484	ENSLSDP00000022800	Vasopressin V1b receptor.	Vasopressin V1a receptor.	0.907
AVPR1B	LOC110473284	ENSLSDP00000002484	ENSLSDP00000002009	Vasopressin V1b receptor.	Vasotocin-neurophysin VT.	0.980
AVPR1B	LOC110478544	ENSLSDP00000002484	ENSLSDP00000008775	Vasopressin V1b receptor.	[Arg8]-vasotocin receptor; Belongs to the G-protein coupled receptor 1 family. Vasopressin/oxytocin receptor subfamily.	0.903
CRYAB	LOC110473284	ENSLSDP00000008592	ENSLSDP00000002009	Alpha-crystallin B chain; Belongs to the small heat shock protein (HSP20) family.	Vasotocin-neurophysin VT.	0.629
LOC110472947	LOC110473284	ENSLSDP00000025484	ENSLSDP00000002009	Putative G-protein coupled receptor 19.	Vasotocin-neurophysin VT.	0.647
LOC110472977	LOC110473284	ENSLSDP00000025481	ENSLSDP00000002009	Putative G-protein coupled receptor 19.	Vasotocin-neurophysin VT.	0.647
LOC110473284	AQP1	ENSLSDP00000002009	ENSLSDP00000014298	Vasotocin-neurophysin VT.	Aquaporin-1; Belongs to the MIP/aquaporin (TC 1.A.8) family.	0.699
LOC110473284	AVPR1A	ENSLSDP00000002009	ENSLSDP00000022800	Vasotocin-neurophysin VT.	Vasopressin V1a receptor.	0.980
LOC110473284	AVPR1B	ENSLSDP00000002009	ENSLSDP00000002484	Vasotocin-neurophysin VT.	Vasopressin V1b receptor.	0.980
LOC110473284	CRYAB	ENSLSDP00000002009	ENSLSDP00000008592	Vasotocin-neurophysin VT.	Alpha-crystallin B chain; Belongs to the small heat shock protein (HSP20) family.	0.629
LOC110473284	LOC110472947	ENSLSDP00000002009	ENSLSDP00000025484	Vasotocin-neurophysin VT.	Putative G-protein coupled receptor 19.	0.647
LOC110473284	LOC110472977	ENSLSDP00000002009	ENSLSDP00000025481	Vasotocin-neurophysin VT.	Putative G-protein coupled receptor 19.	0.647
LOC110473284	LOC110478544	ENSLSDP00000002009	ENSLSDP00000008775	Vasotocin-neurophysin VT.	[Arg8]-vasotocin receptor; Belongs to the G-protein coupled receptor 1 family. Vasopressin/oxytocin receptor subfamily.	0.980
LOC110473284	NPSR1	ENSLSDP00000002009	ENSLSDP00000004020	Vasotocin-neurophysin VT.	Neuropeptide S receptor; Belongs to the G-protein coupled receptor 1 family.	0.700
LOC110473284	OXTR	ENSLSDP00000002009	ENSLSDP00000002939	Vasotocin-neurophysin VT.	Mesotocin receptor.	0.817
LOC110473284	TRH	ENSLSDP00000002009	ENSLSDP00000023392	Vasotocin-neurophysin VT.	Pro-thyrotropin-releasing hormone; Functions as a regulator of the biosynthesis of TSH in the anterior pituitary gland and as a neurotransmitter/ neuromodulator in the central and peripheral nervous systems.	0.621