OLFML3 protein (Lonchura striata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

OLFML3

Olfactomedin-like protein 3. (393 aa)

Predicted Functional Partners:

TMEM119

0.887

OGN

0.711

P2RY12

0.693

CEBPB

0.597

CDK5

0.592

TSPO

0.567

RSBN1

0.567

LOC110477148

0.565

CSF1R

0.562

RPS21

0.506

Your Current Organism:

Lonchura striata

NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CDK5	OLFML3	ENSLSDP00000018302	ENSLSDP00000002019	Cyclin-dependent-like kinase 5; Belongs to the protein kinase superfamily.	Olfactomedin-like protein 3.	0.592
CEBPB	OLFML3	ENSLSDP00000020686	ENSLSDP00000002019	CCAAT/enhancer-binding protein.	Olfactomedin-like protein 3.	0.597
CSF1R	LOC110477148	ENSLSDP00000013561	ENSLSDP00000023975	Macrophage colony-stimulating factor 1 receptor; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily.	Triggering receptor expressed on myeloid cells 2.	0.506
CSF1R	OLFML3	ENSLSDP00000013561	ENSLSDP00000002019	Macrophage colony-stimulating factor 1 receptor; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily.	Olfactomedin-like protein 3.	0.562
CSF1R	P2RY12	ENSLSDP00000013561	ENSLSDP00000011747	Macrophage colony-stimulating factor 1 receptor; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily.	P2Y purinoceptor 12.	0.448
CSF1R	TMEM119	ENSLSDP00000013561	ENSLSDP00000010038	Macrophage colony-stimulating factor 1 receptor; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily.	Transmembrane protein 119.	0.684
CSF1R	TSPO	ENSLSDP00000013561	ENSLSDP00000006150	Macrophage colony-stimulating factor 1 receptor; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily.	Translocator protein.	0.426
LOC110477148	CSF1R	ENSLSDP00000023975	ENSLSDP00000013561	Triggering receptor expressed on myeloid cells 2.	Macrophage colony-stimulating factor 1 receptor; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily.	0.506
LOC110477148	OLFML3	ENSLSDP00000023975	ENSLSDP00000002019	Triggering receptor expressed on myeloid cells 2.	Olfactomedin-like protein 3.	0.565
LOC110477148	P2RY12	ENSLSDP00000023975	ENSLSDP00000011747	Triggering receptor expressed on myeloid cells 2.	P2Y purinoceptor 12.	0.647
LOC110477148	TMEM119	ENSLSDP00000023975	ENSLSDP00000010038	Triggering receptor expressed on myeloid cells 2.	Transmembrane protein 119.	0.695
OGN	OLFML3	ENSLSDP00000025477	ENSLSDP00000002019	Mimecan.	Olfactomedin-like protein 3.	0.711
OLFML3	CDK5	ENSLSDP00000002019	ENSLSDP00000018302	Olfactomedin-like protein 3.	Cyclin-dependent-like kinase 5; Belongs to the protein kinase superfamily.	0.592
OLFML3	CEBPB	ENSLSDP00000002019	ENSLSDP00000020686	Olfactomedin-like protein 3.	CCAAT/enhancer-binding protein.	0.597
OLFML3	CSF1R	ENSLSDP00000002019	ENSLSDP00000013561	Olfactomedin-like protein 3.	Macrophage colony-stimulating factor 1 receptor; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily.	0.562
OLFML3	LOC110477148	ENSLSDP00000002019	ENSLSDP00000023975	Olfactomedin-like protein 3.	Triggering receptor expressed on myeloid cells 2.	0.565
OLFML3	OGN	ENSLSDP00000002019	ENSLSDP00000025477	Olfactomedin-like protein 3.	Mimecan.	0.711
OLFML3	P2RY12	ENSLSDP00000002019	ENSLSDP00000011747	Olfactomedin-like protein 3.	P2Y purinoceptor 12.	0.693
OLFML3	RPS21	ENSLSDP00000002019	ENSLSDP00000005830	Olfactomedin-like protein 3.	40S ribosomal protein S21; Belongs to the eukaryotic ribosomal protein eS21 family.	0.506
OLFML3	RSBN1	ENSLSDP00000002019	ENSLSDP00000010860	Olfactomedin-like protein 3.	Round spermatid basic protein 1.	0.567