FAM162B protein (Lonchura striata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

FAM162B

Protein FAM162B. (144 aa)

Predicted Functional Partners:

USP32

0.874

TMEM167A

0.873

SCFD1

0.794

YPEL5

0.789

ZPLD1

0.704

GPR162

0.695

GOLGA5

0.685

NBAS

0.550

INPP4B

0.550

LOC110484394

0.537

Your Current Organism:

Lonchura striata

NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FAM162B	GOLGA5	ENSLSDP00000002022	ENSLSDP00000005807	Protein FAM162B.	Golgin subfamily A member 5.	0.685
FAM162B	GPR162	ENSLSDP00000002022	ENSLSDP00000016857	Protein FAM162B.	Probable G-protein coupled receptor 162.	0.695
FAM162B	INPP4B	ENSLSDP00000002022	ENSLSDP00000015967	Protein FAM162B.	Type II inositol 3,4-bisphosphate 4-phosphatase.	0.550
FAM162B	LOC110484394	ENSLSDP00000002022	ENSLSDP00000004440	Protein FAM162B.	WD repeat-containing protein 7.	0.537
FAM162B	NBAS	ENSLSDP00000002022	ENSLSDP00000000484	Protein FAM162B.	Neuroblastoma-amplified sequence.	0.550
FAM162B	SCFD1	ENSLSDP00000002022	ENSLSDP00000000330	Protein FAM162B.	Sec1 family domain-containing protein 1; Belongs to the STXBP/unc-18/SEC1 family.	0.794
FAM162B	TMEM167A	ENSLSDP00000002022	ENSLSDP00000012492	Protein FAM162B.	Protein kish; Involved in the early part of the secretory pathway. Belongs to the KISH family.	0.873
FAM162B	USP32	ENSLSDP00000002022	ENSLSDP00000012010	Protein FAM162B.	Ubiquitin carboxyl-terminal hydrolase 32; Belongs to the peptidase C19 family.	0.874
FAM162B	YPEL5	ENSLSDP00000002022	ENSLSDP00000022862	Protein FAM162B.	Protein yippee-like; Belongs to the yippee family.	0.789
FAM162B	ZPLD1	ENSLSDP00000002022	ENSLSDP00000006965	Protein FAM162B.	Zona pellucida-like domain-containing protein 1.	0.704
GOLGA5	FAM162B	ENSLSDP00000005807	ENSLSDP00000002022	Golgin subfamily A member 5.	Protein FAM162B.	0.685
GOLGA5	NBAS	ENSLSDP00000005807	ENSLSDP00000000484	Golgin subfamily A member 5.	Neuroblastoma-amplified sequence.	0.475
GOLGA5	TMEM167A	ENSLSDP00000005807	ENSLSDP00000012492	Golgin subfamily A member 5.	Protein kish; Involved in the early part of the secretory pathway. Belongs to the KISH family.	0.579
GOLGA5	USP32	ENSLSDP00000005807	ENSLSDP00000012010	Golgin subfamily A member 5.	Ubiquitin carboxyl-terminal hydrolase 32; Belongs to the peptidase C19 family.	0.567
GPR162	FAM162B	ENSLSDP00000016857	ENSLSDP00000002022	Probable G-protein coupled receptor 162.	Protein FAM162B.	0.695
GPR162	SCFD1	ENSLSDP00000016857	ENSLSDP00000000330	Probable G-protein coupled receptor 162.	Sec1 family domain-containing protein 1; Belongs to the STXBP/unc-18/SEC1 family.	0.427
GPR162	TMEM167A	ENSLSDP00000016857	ENSLSDP00000012492	Probable G-protein coupled receptor 162.	Protein kish; Involved in the early part of the secretory pathway. Belongs to the KISH family.	0.688
GPR162	USP32	ENSLSDP00000016857	ENSLSDP00000012010	Probable G-protein coupled receptor 162.	Ubiquitin carboxyl-terminal hydrolase 32; Belongs to the peptidase C19 family.	0.634
GPR162	YPEL5	ENSLSDP00000016857	ENSLSDP00000022862	Probable G-protein coupled receptor 162.	Protein yippee-like; Belongs to the yippee family.	0.572
INPP4B	FAM162B	ENSLSDP00000015967	ENSLSDP00000002022	Type II inositol 3,4-bisphosphate 4-phosphatase.	Protein FAM162B.	0.550