STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMNDC1Survival of motor neuron-related-splicing factor 30. (238 aa)    
Predicted Functional Partners:
PRPF6
Pre-mRNA-processing factor 6.
    
 
 0.919
DDX46
Putative ATP-dependent RNA helicase DDX46.
   
 
 0.910
PHF5A
PHD finger-like domain-containing protein 5A.
     
 0.908
RBM17
Splicing factor 45.
   
 
  0.882
U2SURP
U2 snRNP-associated SURP motif-containing protein.
    
  0.876
SNRPA1
U2 small nuclear ribonucleoprotein A.
     
 0.831
SF3B1
Splicing factor 3B subunit 1.
   
 0.819
SF3A2
Splicing factor 3A subunit 2.
    
  0.785
SF3B3
Splicing factor 3B subunit 3.
  
 
 0.778
LRMDA
Leucine-rich repeat-containing protein C10orf11.
     
 0.734
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
Server load: low (36%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.