STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XPNPEP1Xaa-Pro aminopeptidase 1; Belongs to the peptidase M24B family. (623 aa)    
Predicted Functional Partners:
DNPEP
Aspartyl aminopeptidase; Belongs to the peptidase M18 family.
   
 
 0.506
DMGDH
Dimethylglycine dehydrogenase, mitochondrial.
  
 0.453
SARDH
Sarcosine dehydrogenase, mitochondrial.
  
 0.451
PDPR
Pyruvate dehydrogenase phosphatase regulatory subunit, mitochondrial.
  
 0.451
AMT
Aminomethyltransferase; The glycine cleavage system catalyzes the degradation of glycine; Belongs to the GcvT family.
  
 0.436
ENSLSDP00000004019
annotation not available
   
 
 0.413
ENSLSDP00000005957
annotation not available
   
 
 0.413
PIPOX
Peroxisomal sarcosine oxidase.
  
 
 0.412
BLMH
Bleomycin hydrolase; Belongs to the peptidase C1 family.
  
  
 0.401
MARS1
Methionine--tRNA ligase, cytoplasmic; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 
 0.400
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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