STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ITGB5Integrin beta; Belongs to the integrin beta chain family. (811 aa)    
Predicted Functional Partners:
ITGAV
Integrin alpha-V; Belongs to the integrin alpha chain family.
   
 0.985
VTN
Vitronectin.
    
 0.977
PXN
Paxillin; Belongs to the paxillin family.
   
 0.969
ITGA1
Integrin alpha-1; Belongs to the integrin alpha chain family.
   
 0.966
PTK2
Focal adhesion kinase 1; Belongs to the protein kinase superfamily. Tyr protein kinase family.
   
 0.959
SPP1
Osteopontin.
    
 0.953
SRC
Tyrosine-protein kinase.
   
 0.953
TLN1
Talin-1.
   
 0.950
TLN2
Talin-2.
   
 0.949
ITGA4
Integrin alpha-4; Belongs to the integrin alpha chain family.
   
 0.940
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.