Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ITGB5Integrin beta; Belongs to the integrin beta chain family. (811 aa)    
Predicted Functional Partners:
ITGAV
Integrin alpha-V; Belongs to the integrin alpha chain family.
   
 0.995
PTK2
Focal adhesion kinase 1; Belongs to the protein kinase superfamily. Tyr protein kinase family.
   
 0.979
VTN
Vitronectin.
    
 0.975
PXN
Paxillin; Belongs to the paxillin family.
   
 0.970
ITGA1
Integrin alpha-1; Belongs to the integrin alpha chain family.
   
 0.965
ITGB3
Integrin beta; Belongs to the integrin beta chain family.
  
 
 
0.957
ENSLSDP00000014421
annotation not available
   
 0.955
ITGA3
Integrin alpha-3; Belongs to the integrin alpha chain family.
   
 0.954
TLN2
Talin-2.
   
 0.954
TLN1
Talin-1.
   
 0.954
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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