Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
MID2Putative E3 ubiquitin-protein ligase MID2. (687 aa)    
Predicted Functional Partners:
IGBP1
Immunoglobulin-binding protein 1 isoform X1.
    
 
 0.771
PTPA
Serine/threonine-protein phosphatase 2A activator; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.
    
 
 0.637
PCNP
PEST proteolytic signal-containing nuclear protein.
      
 0.451
RD3
Protein RD3.
      
 0.421
PPP2CA
Serine/threonine-protein phosphatase.
    
 
 0.420
PPP2CB
Serine/threonine-protein phosphatase.
    
 
 0.420
RNF41
LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase NRDP1.
    
 0.409
FSD2
Fibronectin type III and SPRY domain-containing protein 2.
      
 0.408
SYT17
Synaptotagmin-17.
    
  0.402
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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