STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COPS6COP9 signalosome complex subunit 6. (236 aa)    
Predicted Functional Partners:
COPS4
COP9 signalosome complex subunit 4.
   
 0.999
COPS2
COP9 signalosome complex subunit 2.
   
 0.999
GPS1
COP9 signalosome complex subunit 1.
   
 0.998
COPS3
COP9 signalosome complex subunit 3.
   
 0.998
COPS8
COP9 signalosome complex subunit 8.
   
 0.998
COPS5
COP9 signalosome complex subunit 5.
   
 0.998
NEDD8
Ubiquitin-like protein Nedd8.
   
 0.984
COPS7A
COP9 signalosome complex subunit 7a.
    
 0.984
COPS7B
COP9 signalosome complex subunit 7b.
    
 0.983
PPP1R42
Protein phosphatase 1 regulatory subunit 42.
   
 0.974
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.