Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
COPS6COP9 signalosome complex subunit 6. (236 aa)    
Predicted Functional Partners:
COPS8
COP9 signalosome complex subunit 8.
   
 0.998
COPS5
COP9 signalosome complex subunit 5.
   
 0.998
COPS4
COP9 signalosome complex subunit 4.
   
 0.997
GPS1
COP9 signalosome complex subunit 1.
   
 0.996
COPS2
COP9 signalosome complex subunit 2.
   
 0.996
COPS3
COP9 signalosome complex subunit 3.
   
 0.995
COPS7B
COP9 signalosome complex subunit 7b.
   
 0.992
COPS7A
COP9 signalosome complex subunit 7a.
   
 0.992
NEDD8
Ubiquitin-like protein Nedd8.
   
 0.976
CUL1
Cullin-1; Belongs to the cullin family.
    
 0.973
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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