Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSLSDP00000002152annotation not available (115 aa)    
Predicted Functional Partners:
PNISR
Arginine/serine-rich protein PNISR.
   
 0.672
RBM23
Putative RNA-binding protein 23.
   
  0.667
RBM39
RNA-binding protein 39.
   
  0.667
SF3B1
Splicing factor 3B subunit 1.
   
  0.659
ANKRD11
Ankyrin repeat domain-containing protein 11.
   
  0.642
ANKRD12
Ankyrin repeat domain-containing protein 12.
   
  0.642
ANKRD31
Ankyrin repeat domain-containing protein 31.
   
  0.642
UNC79
Protein unc-79.
    
 0.634
LOC110478774
E3 SUMO-protein ligase RanBP2.
   
 0.620
SRRM3
Serine/arginine repetitive matrix protein 3.
   
 0.581
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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