Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EIF2DEukaryotic translation initiation factor 2D. (599 aa)    
Predicted Functional Partners:
DENR
Density-regulated protein.
    
 
 0.759
ZNHIT2
Zinc finger HIT domain-containing protein 2.
    
   0.717
RACK1
Guanine nucleotide-binding protein subunit beta-2-like 1.
    
   0.717
PRPF6
Pre-mRNA-processing factor 6.
    
   0.708
RPS3
40S ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.
    
 
 0.706
EIF5B
Eukaryotic translation initiation factor 5B.
      
 0.689
MCTS1
Malignant T-cell-amplified sequence.
    
 
 0.673
RPS4X
40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.
    
   0.662
RPS2
40S ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family.
    
   0.645
RPS12
40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family.
    
   0.642
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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