STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AIFM1Apoptosis-inducing factor 1, mitochondrial. (598 aa)    
Predicted Functional Partners:
CHCHD4
Mitochondrial intermembrane space import and assembly protein 40.
    
 
 0.943
BAX
Apoptosis regulator BAX.
    
 0.915
PPIA
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
    
 0.886
NDUFS5
NADH dehydrogenase [ubiquinone] iron-sulfur protein 5.
    
 
 0.865
TXN
Thioredoxin; Belongs to the thioredoxin family.
   
 
 0.862
AK2
Adenylate kinase 2, mitochondrial; Belongs to the adenylate kinase family.
   
   0.858
ENDOG
Endonuclease.
    
 
 0.839
EXOG
Nuclease EXOG, mitochondrial.
    
 
 0.839
ENSLSDP00000001112
annotation not available
    
 
 0.838
OTUD1
OTU domain-containing protein 1.
    
   0.836
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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