Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ROPN1LRopporin-1-like protein. (218 aa)    
Predicted Functional Partners:
AK9
Adenylate kinase 9.
   
 
 0.861
CFAP44
Cilia-and flagella-associated protein 44.
   
 
 0.638
RIBC2
RIB43A-like with coiled-coils protein 2.
    
 
 0.626
TTC29
Tetratricopeptide repeat protein 29.
   
 
 0.616
CATIP
Ciliogenesis-associated TTC17-interacting protein.
   
 
 0.610
CCDC63
Coiled-coil domain-containing protein 63.
   
 
 0.609
DNALI1
Axonemal dynein light intermediate polypeptide 1.
   
 
 0.609
NME5
Nucleoside diphosphate kinase 5; Belongs to the NDK family.
   
 
 0.585
EFCAB2
EF-hand calcium-binding domain-containing protein 2.
    
 
 0.559
CFAP36
Cilia-and flagella-associated protein 36.
      
 0.549
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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