STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC110478143Deoxyribodipyrimidine photo-lyase. (501 aa)    
Predicted Functional Partners:
PER3
Period circadian 3.
   
 0.674
PER2
Period circadian 2.
   
 0.674
TIMELESS
Protein timeless.
    
 0.645
ENSLSDP00000021097
annotation not available
    
 0.645
POLR1E
DNA-directed RNA polymerase I subunit RPA49.
      
 0.469
TSPO
Translocator protein.
  
  
 0.461
LOC110477159
Translocator protein.
  
  
 0.461
SOD2
Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
  
   0.459
SKP1
S-phase kinase-associated protein 1; Belongs to the SKP1 family.
    
 
 0.438
KDM2A
Lysine-specific demethylase 2A.
    
 0.415
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.