Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CDH12Cadherin-12; Cadherins are calcium-dependent cell adhesion proteins. (793 aa)    
Predicted Functional Partners:
CDH8
Cadherin-8; Cadherins are calcium-dependent cell adhesion proteins.
    
 
0.925
CDH7
Cadherin-7; Cadherins are calcium-dependent cell adhesion proteins.
    
0.830
CTNNB1
Catenin beta-1.
    
 0.820
CDH11
Cadherin-11; Cadherins are calcium-dependent cell adhesion proteins.
  
 
 
0.801
CTNNA1
Catenin alpha-1.
   
 0.791
CDH18
Cadherin-18; Cadherins are calcium-dependent cell adhesion proteins.
   
 
 
0.781
CDH9
Cadherin-9; Cadherins are calcium-dependent cell adhesion proteins.
  
 
0.762
CDH13
Cadherin-13.
     
0.750
CDH5
Cadherin-5; Cadherins are calcium-dependent cell adhesion proteins.
     
 
0.746
CDH4
Cadherin-4; Cadherins are calcium-dependent cell adhesion proteins.
    
 
0.736
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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