STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NEUROD6Neurogenic differentiation factor. (337 aa)    
Predicted Functional Partners:
TBR1
T-box brain protein 1.
   
  
 0.779
FOXG1
Forkhead box protein G1.
   
  
 0.690
SATB2
DNA-binding protein SATB.
   
  
 0.679
FEZF2
Fez family zinc finger protein 2.
   
 
 0.676
LOC110468683
Homeobox protein EMX1.
   
  
 0.675
RORA
Nuclear receptor ROR-alpha.
   
  
 0.670
SAP30
Histone deacetylase complex subunit SAP30.
      
 0.667
GRIN2B
Glutamate receptor ionotropic, NMDA 2B.
   
  
 0.596
GRM3
Metabotropic glutamate receptor 3.
   
  
 0.586
GABRB3
Gamma-aminobutyric acid receptor subunit beta-3; Belongs to the ligand-gated ion channel (TC 1.A.9) family.
   
  
 0.584
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.