Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC110481663Low-density lipoprotein receptor-related protein 3-like. (726 aa)    
Predicted Functional Partners:
ITSN2
Intersectin-2.
    
 0.571
CCNE1
G1/S-specific cyclin-E1; Belongs to the cyclin family.
      
 0.537
APLP2
Amyloid-like protein 2.
    
 0.469
APP
Amyloid beta A4 protein.
    
 0.469
SMP
Schwann cell myelin protein.
      
 0.467
RBBP5
Retinoblastoma-binding protein 5.
      
 0.433
ITSN1
Intersectin-1.
    
 0.426
MANF
Mesencephalic astrocyte-derived neurotrophic factor.
      
 0.415
SRD5A3
Polyprenol reductase.
      
 0.411
ANAPC13
Anaphase-promoting complex subunit 13.
      
 0.408
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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