NUP205 protein (Lonchura striata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

NUP205

Nuclear pore complex protein Nup205. (2063 aa)

Predicted Functional Partners:

NUP93

0.999

LOC110478774

0.999

NUP155

0.999

NUP54

0.996

NUP107

0.994

NUP85

0.994

NUP160

0.992

NUP188

0.989

NUP133

0.989

NUP214

0.987

Your Current Organism:

Lonchura striata

NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC110478774	NUP107	ENSLSDP00000012718	ENSLSDP00000004548	E3 SUMO-protein ligase RanBP2.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.999
LOC110478774	NUP133	ENSLSDP00000012718	ENSLSDP00000023248	E3 SUMO-protein ligase RanBP2.	Nuclear pore complex protein Nup133.	0.999
LOC110478774	NUP155	ENSLSDP00000012718	ENSLSDP00000014299	E3 SUMO-protein ligase RanBP2.	Nuclear pore complex protein Nup155.	0.999
LOC110478774	NUP160	ENSLSDP00000012718	ENSLSDP00000011211	E3 SUMO-protein ligase RanBP2.	Nuclear pore complex protein Nup160.	0.999
LOC110478774	NUP188	ENSLSDP00000012718	ENSLSDP00000004043	E3 SUMO-protein ligase RanBP2.	Nucleoporin NUP188.	0.985
LOC110478774	NUP205	ENSLSDP00000012718	ENSLSDP00000002332	E3 SUMO-protein ligase RanBP2.	Nuclear pore complex protein Nup205.	0.999
LOC110478774	NUP214	ENSLSDP00000012718	ENSLSDP00000003106	E3 SUMO-protein ligase RanBP2.	Nuclear pore complex protein Nup214.	0.999
LOC110478774	NUP54	ENSLSDP00000012718	ENSLSDP00000000574	E3 SUMO-protein ligase RanBP2.	Nuclear pore complex protein Nup54.	0.999
LOC110478774	NUP85	ENSLSDP00000012718	ENSLSDP00000020445	E3 SUMO-protein ligase RanBP2.	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	0.999
LOC110478774	NUP93	ENSLSDP00000012718	ENSLSDP00000001084	E3 SUMO-protein ligase RanBP2.	Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance; Belongs to the nucleoporin interacting component (NIC) family.	0.999
NUP107	LOC110478774	ENSLSDP00000004548	ENSLSDP00000012718	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	E3 SUMO-protein ligase RanBP2.	0.999
NUP107	NUP133	ENSLSDP00000004548	ENSLSDP00000023248	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	Nuclear pore complex protein Nup133.	0.999
NUP107	NUP155	ENSLSDP00000004548	ENSLSDP00000014299	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	Nuclear pore complex protein Nup155.	0.986
NUP107	NUP160	ENSLSDP00000004548	ENSLSDP00000011211	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	Nuclear pore complex protein Nup160.	0.999
NUP107	NUP188	ENSLSDP00000004548	ENSLSDP00000004043	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	Nucleoporin NUP188.	0.954
NUP107	NUP205	ENSLSDP00000004548	ENSLSDP00000002332	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	Nuclear pore complex protein Nup205.	0.994
NUP107	NUP214	ENSLSDP00000004548	ENSLSDP00000003106	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	Nuclear pore complex protein Nup214.	0.994
NUP107	NUP54	ENSLSDP00000004548	ENSLSDP00000000574	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	Nuclear pore complex protein Nup54.	0.986
NUP107	NUP85	ENSLSDP00000004548	ENSLSDP00000020445	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	0.999
NUP107	NUP93	ENSLSDP00000004548	ENSLSDP00000001084	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance; Belongs to the nucleoporin interacting component (NIC) family.	0.995