Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CNOT4CCR4-NOT transcription complex subunit 4. (762 aa)    
Predicted Functional Partners:
CNOT1
CCR4-NOT transcription complex subunit 1.
    
 0.999
CNOT2
CCR4-NOT transcription complex subunit 2.
   
 0.998
CNOT9
Cell differentiation protein RCD1.
    
 0.994
CNOT10
CCR4-NOT transcription complex subunit 10.
    
 0.992
CNOT7
CCR4-NOT transcription complex subunit 7.
    
 0.988
CNOT11
CCR4-NOT transcription complex subunit 11.
     
 0.983
CNOT8
CCR4-NOT transcription complex subunit 8.
    
 0.974
DDX6
Putative ATP-dependent RNA helicase DDX6.
    
 0.933
TNKS1BP1
Tankyrase-1-binding protein.
    
 0.896
CNOT6
CCR4-NOT transcription complex subunit 6.
    
 0.883
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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