Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
NRN1Neuritin. (143 aa)    
Predicted Functional Partners:
TGFBI
Transforming growth factor-beta-induced protein ig-h3.
      
 0.629
GAP43
Neuromodulin.
   
  
 0.551
GSG1
Germ cell-specific gene 1 protein.
      
 0.547
GSG1L
Germ cell-specific gene 1-like protein.
      
 0.547
BDNF
Brain-derived neurotrophic factor; Promotes the survival of neuronal populations that are all located either in the central nervous system or directly connected to it; Belongs to the NGF-beta family.
      
 0.522
GPNMB
Protein QNR-71.
      
 0.494
ALCAM
CD166 antigen.
      
 0.492
NTF3
Neurotrophin-3; Seems to promote the survival of visceral and proprioceptive sensory neurons; Belongs to the NGF-beta family.
      
 0.473
SFXN4
Sideroflexin-4.
      
 0.467
LRATD2
Protein FAM84B.
      
 0.466
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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