Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
YME1L1ATP-dependent zinc metalloprotease YME1L1. (723 aa)    
Predicted Functional Partners:
OMA1
Metalloendopeptidase OMA1, mitochondrial.
  
 0.979
NDUFA13
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13.
   
   0.922
TIMMDC1
Complex I assembly factor TIMMDC1, mitochondrial.
    
   0.922
SPG7
Paraplegin.
   
 0.852
NDUFA11
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 11.
   
   0.846
ATP5F1A
ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.
   
 0.838
TIMM9
Mitochondrial import inner membrane translocase subunit Tim9.
   
 0.835
IMMT
MICOS complex subunit MIC60; Component of the MICOS complex, a large protein complex of the mitochondrial inner membrane that plays crucial roles in the maintenance of crista junctions, inner membrane architecture, and formation of contact sites to the outer membrane.
   
 
 0.813
AFG3L2
AFG3-like protein 2.
   
 0.797
STOML2
Stomatin-like protein 2, mitochondrial.
   
 0.796
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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