LOC110483136 protein (Lonchura striata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC110483136

Solute carrier family 23 member 1. (589 aa)

Predicted Functional Partners:

GART

0.847

LOC110479231

0.847

UMPS

0.797

GOLT1A

0.701

GOLT1B

0.701

DHODH

0.621

DPYD

0.621

LOC110468816

0.559

CPS1

0.549

ENSLSDP00000001904

0.549

Your Current Organism:

Lonchura striata

NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CPS1	DHODH	ENSLSDP00000001898	ENSLSDP00000000468	Carbamoyl-phosphate synthase [ammonia], mitochondrial.	Dihydroorotate dehydrogenase (quinone), mitochondrial; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily.	0.892
CPS1	DPYD	ENSLSDP00000001898	ENSLSDP00000015086	Carbamoyl-phosphate synthase [ammonia], mitochondrial.	Dihydropyrimidine dehydrogenase [NADP(+)]; Involved in pyrimidine base degradation. Catalyzes the reduction of uracil and thymine; Belongs to the dihydropyrimidine dehydrogenase family.	0.801
CPS1	GART	ENSLSDP00000001898	ENSLSDP00000021446	Carbamoyl-phosphate synthase [ammonia], mitochondrial.	Trifunctional purine biosynthetic protein adenosine-3.	0.841
CPS1	GOLT1A	ENSLSDP00000001898	ENSLSDP00000012793	Carbamoyl-phosphate synthase [ammonia], mitochondrial.	Golgi transport 1A.	0.690
CPS1	GOLT1B	ENSLSDP00000001898	ENSLSDP00000013099	Carbamoyl-phosphate synthase [ammonia], mitochondrial.	Vesicle transport protein GOT1B.	0.690
CPS1	LOC110479231	ENSLSDP00000001898	ENSLSDP00000021458	Carbamoyl-phosphate synthase [ammonia], mitochondrial.	Trifunctional purine biosynthetic protein adenosine-3.	0.841
CPS1	LOC110483136	ENSLSDP00000001898	ENSLSDP00000002449	Carbamoyl-phosphate synthase [ammonia], mitochondrial.	Solute carrier family 23 member 1.	0.549
CPS1	UMPS	ENSLSDP00000001898	ENSLSDP00000002123	Carbamoyl-phosphate synthase [ammonia], mitochondrial.	Uridine 5'-monophosphate synthase.	0.896
DHODH	CPS1	ENSLSDP00000000468	ENSLSDP00000001898	Dihydroorotate dehydrogenase (quinone), mitochondrial; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily.	Carbamoyl-phosphate synthase [ammonia], mitochondrial.	0.892
DHODH	DPYD	ENSLSDP00000000468	ENSLSDP00000015086	Dihydroorotate dehydrogenase (quinone), mitochondrial; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily.	Dihydropyrimidine dehydrogenase [NADP(+)]; Involved in pyrimidine base degradation. Catalyzes the reduction of uracil and thymine; Belongs to the dihydropyrimidine dehydrogenase family.	0.536
DHODH	ENSLSDP00000001904	ENSLSDP00000000468	ENSLSDP00000001904	Dihydroorotate dehydrogenase (quinone), mitochondrial; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily.	annotation not available	0.825
DHODH	GART	ENSLSDP00000000468	ENSLSDP00000021446	Dihydroorotate dehydrogenase (quinone), mitochondrial; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily.	Trifunctional purine biosynthetic protein adenosine-3.	0.815
DHODH	GOLT1A	ENSLSDP00000000468	ENSLSDP00000012793	Dihydroorotate dehydrogenase (quinone), mitochondrial; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily.	Golgi transport 1A.	0.895
DHODH	GOLT1B	ENSLSDP00000000468	ENSLSDP00000013099	Dihydroorotate dehydrogenase (quinone), mitochondrial; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily.	Vesicle transport protein GOT1B.	0.895
DHODH	LOC110479231	ENSLSDP00000000468	ENSLSDP00000021458	Dihydroorotate dehydrogenase (quinone), mitochondrial; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily.	Trifunctional purine biosynthetic protein adenosine-3.	0.815
DHODH	LOC110483136	ENSLSDP00000000468	ENSLSDP00000002449	Dihydroorotate dehydrogenase (quinone), mitochondrial; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily.	Solute carrier family 23 member 1.	0.621
DHODH	UMPS	ENSLSDP00000000468	ENSLSDP00000002123	Dihydroorotate dehydrogenase (quinone), mitochondrial; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily.	Uridine 5'-monophosphate synthase.	0.998
DPYD	CPS1	ENSLSDP00000015086	ENSLSDP00000001898	Dihydropyrimidine dehydrogenase [NADP(+)]; Involved in pyrimidine base degradation. Catalyzes the reduction of uracil and thymine; Belongs to the dihydropyrimidine dehydrogenase family.	Carbamoyl-phosphate synthase [ammonia], mitochondrial.	0.801
DPYD	DHODH	ENSLSDP00000015086	ENSLSDP00000000468	Dihydropyrimidine dehydrogenase [NADP(+)]; Involved in pyrimidine base degradation. Catalyzes the reduction of uracil and thymine; Belongs to the dihydropyrimidine dehydrogenase family.	Dihydroorotate dehydrogenase (quinone), mitochondrial; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily.	0.536
DPYD	ENSLSDP00000001904	ENSLSDP00000015086	ENSLSDP00000001904	Dihydropyrimidine dehydrogenase [NADP(+)]; Involved in pyrimidine base degradation. Catalyzes the reduction of uracil and thymine; Belongs to the dihydropyrimidine dehydrogenase family.	annotation not available	0.799