STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCDC6Coiled-coil domain-containing protein 6. (475 aa)    
Predicted Functional Partners:
LOC110482800
Serine/threonine-protein phosphatase.
    
 
 0.631
PPP4C
Serine/threonine-protein phosphatase.
    
 
 0.568
RET
Proto-oncogene tyrosine-protein kinase receptor Ret; Receptor tyrosine-protein kinase involved in numerous cellular mechanisms including cell proliferation, neuronal navigation, cell migration, and cell differentiation upon binding with glial cell derived neurotrophic factor family ligands.
      
 0.555
NCOA4
Nuclear receptor coactivator 4.
      
 0.542
PDXDC1
Pyridoxal-dependent decarboxylase domain-containing protein 1.
      
 0.529
SRRM3
Serine/arginine repetitive matrix protein 3.
      
 0.526
PPME1
Protein phosphatase methylesterase 1; Demethylates proteins that have been reversibly carboxymethylated.
      
 0.524
LOC110483603
Serine/threonine-protein phosphatase 4 regulatory subunit 1.
    
 
 0.498
PPP4R1
Serine/threonine-protein phosphatase 4 regulatory subunit 1.
    
 
 0.498
KDELR2
ER lumen protein-retaining receptor.
      
 0.448
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.