STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAB29Ras-related protein Rab-7L1. (162 aa)    
Predicted Functional Partners:
GAK
Cyclin-G-associated kinase.
    
 
 0.749
LOC110471134
Rab proteins geranylgeranyltransferase component A 2.
    
 0.670
RABGGTA
Geranylgeranyl transferase type-2 subunit alpha.
    
 0.645
NUCKS1
Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1.
 
    
 0.623
RILPL2
RILP-like protein 2.
      
 0.613
RILPL1
RILP-like protein 1.
      
 0.607
DNAJC6
Putative tyrosine-protein phosphatase auxilin.
    
 
 0.594
PM20D1
Putative carboxypeptidase PM20D1.
      
 0.558
BAG5
BAG family molecular chaperone regulator 5.
    
 
 0.538
HPS1
Hermansky-Pudlak syndrome 1 protein.
     
 0.533
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.