CDK5RAP3 protein (Lonchura striata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CDK5RAP3

CDK5 regulatory subunit-associated protein 3. (586 aa)

Predicted Functional Partners:

LOC110470009

0.889

LOC110470166

0.889

DDRGK1

0.756

UFL1

0.740

FKBP6

0.485

UFC1

0.402

Your Current Organism:

Lonchura striata

NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CDK5RAP3	DDRGK1	ENSLSDP00000002585	ENSLSDP00000018783	CDK5 regulatory subunit-associated protein 3.	DDRGK domain-containing protein 1.	0.756
CDK5RAP3	FKBP6	ENSLSDP00000002585	ENSLSDP00000013689	CDK5 regulatory subunit-associated protein 3.	Peptidylprolyl isomerase.	0.485
CDK5RAP3	LOC110470009	ENSLSDP00000002585	ENSLSDP00000002148	CDK5 regulatory subunit-associated protein 3.	CDK5 regulatory subunit-associated protein 3.	0.889
CDK5RAP3	LOC110470166	ENSLSDP00000002585	ENSLSDP00000002179	CDK5 regulatory subunit-associated protein 3.	CDK5 regulatory subunit-associated protein 3-like.	0.889
CDK5RAP3	UFC1	ENSLSDP00000002585	ENSLSDP00000016666	CDK5 regulatory subunit-associated protein 3.	LOW QUALITY PROTEIN: ubiquitin-fold modifier-conjugating enzyme 1.	0.402
CDK5RAP3	UFL1	ENSLSDP00000002585	ENSLSDP00000018494	CDK5 regulatory subunit-associated protein 3.	E3 UFM1-protein ligase 1.	0.740
DDRGK1	CDK5RAP3	ENSLSDP00000018783	ENSLSDP00000002585	DDRGK domain-containing protein 1.	CDK5 regulatory subunit-associated protein 3.	0.756
DDRGK1	LOC110470009	ENSLSDP00000018783	ENSLSDP00000002148	DDRGK domain-containing protein 1.	CDK5 regulatory subunit-associated protein 3.	0.756
DDRGK1	LOC110470166	ENSLSDP00000018783	ENSLSDP00000002179	DDRGK domain-containing protein 1.	CDK5 regulatory subunit-associated protein 3-like.	0.756
DDRGK1	UFC1	ENSLSDP00000018783	ENSLSDP00000016666	DDRGK domain-containing protein 1.	LOW QUALITY PROTEIN: ubiquitin-fold modifier-conjugating enzyme 1.	0.777
DDRGK1	UFL1	ENSLSDP00000018783	ENSLSDP00000018494	DDRGK domain-containing protein 1.	E3 UFM1-protein ligase 1.	0.940
FKBP6	CDK5RAP3	ENSLSDP00000013689	ENSLSDP00000002585	Peptidylprolyl isomerase.	CDK5 regulatory subunit-associated protein 3.	0.485
FKBP6	LOC110470009	ENSLSDP00000013689	ENSLSDP00000002148	Peptidylprolyl isomerase.	CDK5 regulatory subunit-associated protein 3.	0.485
FKBP6	LOC110470166	ENSLSDP00000013689	ENSLSDP00000002179	Peptidylprolyl isomerase.	CDK5 regulatory subunit-associated protein 3-like.	0.485
LOC110470009	CDK5RAP3	ENSLSDP00000002148	ENSLSDP00000002585	CDK5 regulatory subunit-associated protein 3.	CDK5 regulatory subunit-associated protein 3.	0.889
LOC110470009	DDRGK1	ENSLSDP00000002148	ENSLSDP00000018783	CDK5 regulatory subunit-associated protein 3.	DDRGK domain-containing protein 1.	0.756
LOC110470009	FKBP6	ENSLSDP00000002148	ENSLSDP00000013689	CDK5 regulatory subunit-associated protein 3.	Peptidylprolyl isomerase.	0.485
LOC110470009	UFC1	ENSLSDP00000002148	ENSLSDP00000016666	CDK5 regulatory subunit-associated protein 3.	LOW QUALITY PROTEIN: ubiquitin-fold modifier-conjugating enzyme 1.	0.402
LOC110470009	UFL1	ENSLSDP00000002148	ENSLSDP00000018494	CDK5 regulatory subunit-associated protein 3.	E3 UFM1-protein ligase 1.	0.740
LOC110470166	CDK5RAP3	ENSLSDP00000002179	ENSLSDP00000002585	CDK5 regulatory subunit-associated protein 3-like.	CDK5 regulatory subunit-associated protein 3.	0.889