Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
H2AHistone H2A; Belongs to the histone H2A family. (134 aa)    
Predicted Functional Partners:
MYSM1
Histone H2A deubiquitinase MYSM1.
    
 0.807
LOC110483163
Histone H2B; Belongs to the histone H2B family.
  
 0.760
LOC110476495
Histone H2B 1/2/3/4/6; Belongs to the histone H2B family.
  
 0.759
LOC110483171
Histone H2B; Belongs to the histone H2B family.
  
 0.753
LOC110483172
Histone H2B; Belongs to the histone H2B family.
  
 0.753
H2BE1
H2B.E variant histone 1.
  
 0.742
LOC110467620
Histone H2B; Belongs to the histone H2B family.
  
 0.730
UBA52
Ubiquitin-60S ribosomal protein L40.
    
 0.726
ENSLSDP00000001290
annotation not available
   
 0.674
ENSLSDP00000002615
annotation not available
   
 0.674
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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