Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SP4Transcription factor Sp4. (777 aa)    
Predicted Functional Partners:
SP1
Transcription factor Sp1.
    
  0.751
TMEM196
Transmembrane protein 196.
      
 0.698
SETD1B
Histone-lysine N-methyltransferase SETD1B.
   
 0.590
UBE2I
SUMO-conjugating enzyme UBC9; Belongs to the ubiquitin-conjugating enzyme family.
    
  0.585
UFC1
LOW QUALITY PROTEIN: ubiquitin-fold modifier-conjugating enzyme 1.
      
 0.567
CDCA7L
Cell division cycle-associated 7-like protein.
      
 0.566
GAPDH
Glyceraldehyde-3-phosphate dehydrogenase.
    
 
 0.500
ENSLSDP00000012102
annotation not available
    
 0.498
TBP
TATA-box-binding protein.
    
 0.498
PIAS2
E3 SUMO-protein ligase PIAS2.
   
  0.492
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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