STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACOD1Cis-aconitate decarboxylase. (455 aa)    
Predicted Functional Partners:
LOC110477957
Cis-aconitate decarboxylase.
  
  
 
0.902
AMT
Aminomethyltransferase; The glycine cleavage system catalyzes the degradation of glycine; Belongs to the GcvT family.
  
 0.652
DMGDH
Dimethylglycine dehydrogenase, mitochondrial.
  
 0.639
SARDH
Sarcosine dehydrogenase, mitochondrial.
  
 0.639
PDPR
Pyruvate dehydrogenase phosphatase regulatory subunit, mitochondrial.
  
 0.639
AIFM1
Apoptosis-inducing factor 1, mitochondrial.
  
 0.618
PYROXD1
Pyridine nucleotide-disulfide oxidoreductase domain-containing protein 1.
  
 0.618
AIFM3
Apoptosis-inducing factor 3.
  
 0.618
SQOR
Sulfide:quinone oxidoreductase, mitochondrial.
  
 0.618
AIFM2
Apoptosis-inducing factor 2.
  
 0.618
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.