Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LRRFIP2Leucine-rich repeat flightless-interacting protein 2. (464 aa)    
Predicted Functional Partners:
FLII
Protein flightless-1.
    
 
 0.846
PRKDC
DNA-dependent protein kinase catalytic subunit; Belongs to the PI3/PI4-kinase family.
   
 
 0.579
TMOD1
Tropomodulin-1.
   
 
 0.492
TMOD4
Tropomodulin-4.
   
 
 0.492
DDX41
Putative ATP-dependent RNA helicase DDX41.
      
 0.446
CAPZB
F-actin-capping protein subunit beta; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.
   
 
 0.445
UCHL1
Ubiquitin carboxyl-terminal hydrolase.
      
 0.443
DHX36
ATP-dependent RNA helicase DHX36.
      
 0.437
ACTR3
Actin-related protein 3; Belongs to the actin family.
   
   0.435
ACTR3B
Actin-related protein 3B.
   
   0.435
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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