Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TMEM67Meckelin. (910 aa)    
Predicted Functional Partners:
TCTN1
Tectonic-1.
     
 0.993
MKS1
Meckel syndrome type 1 protein.
     
 0.993
B9D1
B9 domain-containing protein 1.
     
 0.992
TMEM216
Transmembrane protein 216.
   
 
 0.987
CC2D2A
Coiled-coil and C2 domain-containing protein 2A.
   
 
 0.987
AHI1
Jouberin.
     
 0.984
B9D2
LOW QUALITY PROTEIN: B9 domain-containing protein 2.
     
 0.936
TCTN2
Tectonic-2.
     
 0.893
NPHP1
Nephrocystin-1.
   
  
 0.891
TMEM231
Transmembrane protein 231.
   
  
 0.877
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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