Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CDH17Cadherin-17. (867 aa)    
Predicted Functional Partners:
CTNNB1
Catenin beta-1.
    
 0.959
PRKAA1
Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily.
      
 0.874
CLDN12
Claudin-12.
      
 0.808
TIMP2
Metalloproteinase inhibitor 2.
   
  
 0.795
CDH8
Cadherin-8; Cadherins are calcium-dependent cell adhesion proteins.
     
0.791
CDH7
Cadherin-7; Cadherins are calcium-dependent cell adhesion proteins.
     
0.786
CDH13
Cadherin-13.
     
0.782
CTNNA1
Catenin alpha-1.
   
 0.772
CDH18
Cadherin-18; Cadherins are calcium-dependent cell adhesion proteins.
     
0.761
CDH10
Cadherin-6; Cadherins are calcium-dependent cell adhesion proteins.
     
0.752
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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