Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
TWISTNBDNA-directed RNA polymerase I subunit RPA43. (329 aa)    
Predicted Functional Partners:
POLR1C
DNA-directed RNA polymerases I and III subunit RPAC1.
   
 0.999
POLR1E
DNA-directed RNA polymerase I subunit RPA49.
   
 0.998
POLR1B
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.998
POLR2E
DNA-directed RNA polymerases I, II, and III subunit RPABC1.
   
 0.996
POLR2F
DNA-directed RNA polymerases I, II, and III subunit RPABC2.
   
 0.994
POLR2K
DNA-directed RNA polymerases I, II, and III subunit RPABC4.
   
 0.994
POLR2H
DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.
   
 0.994
POLR1D
DNA-directed RNA polymerases I and III subunit RPAC2.
   
 0.993
POLR2L
DNA-directed RNA polymerases I, II, and III subunit RPABC5.
   
 0.993
RRN3
RNA polymerase I-specific transcription initiation factor RRN3.
   
 0.991
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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