STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TAGLN3Transgelin; Belongs to the calponin family. (215 aa)    
Predicted Functional Partners:
WDR90
WD repeat-containing protein 90.
    
 
 0.780
ENKUR
Enkurin.
   
 
 0.579
VCL
Vinculin.
   
 
 0.510
WDR1
WD repeat-containing protein 1.
   
 
 0.495
PACRG
Parkin coregulated gene protein.
    
 
 0.484
PACRGL
PACRG-like protein.
    
 
 0.484
ACTC1
Actin, alpha cardiac muscle 1.
   
 0.470
ACTG1
Actin, cytoplasmic 2.
   
 0.470
ACTB
Actin, cytoplasmic 1.
   
 0.470
LOC110479753
Actin, cytoplasmic type 5.
   
 0.470
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.