Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LOC110477443E3 ubiquitin-protein ligase NRDP1. (295 aa)    
Predicted Functional Partners:
MIB2
E3 ubiquitin-protein ligase MIB2.
    
 0.567
UBE2V1
Ubiquitin-conjugating enzyme E2 variant 1.
   
 0.562
RBM18
Putative RNA-binding protein 18.
    
 
 0.539
BIRC6
Baculoviral IAP repeat-containing protein 6.
    
 0.538
DCTN3
Dynactin subunit 3.
      
 0.468
ENSLSDP00000022384
Fc receptor-like protein 2.
    
 
 0.466
ENSLSDP00000022387
annotation not available
    
 
 0.466
ZNF653
Zinc finger protein 653.
    
 0.462
RIPK4
Receptor-interacting serine/threonine-protein kinase 4.
   
 0.457
ZFAND4
AN1-type zinc finger protein 4.
    
 0.442
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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