Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VIRMAProtein virilizer. (1827 aa)    
Predicted Functional Partners:
ZC3H13
Zinc finger CCCH domain-containing protein 13.
   
 
 0.990
WTAP
Pre-mRNA-splicing regulator WTAP.
    
 
 0.989
METTL14
N6-adenosine-methyltransferase subunit METTL14; Belongs to the MT-A70-like family.
    
 0.970
CBLL1
E3 ubiquitin-protein ligase Hakai.
    
 0.966
METTL3
N6-adenosine-methyltransferase subunit; Belongs to the MT-A70-like family.
    
 0.964
ALYREF
THO complex subunit 4.
    
 
 0.886
THOC2
THO complex subunit 2.
   
 
 0.816
ZC3H18
Zinc finger CCCH domain-containing protein 18.
   
   0.761
CPSF6
Cleavage and polyadenylation specificity factor subunit 6.
    
 
 0.758
RBM15
Putative RNA-binding protein 15.
   
 
 0.747
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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